Protein Details: Gamma-aminobutyric acid receptor subunit alpha-1

Protein ID

ICDB_Pro_0665

Protein Name

Gamma-aminobutyric acid receptor subunit alpha-1

Gene Name

Gabra1; Gabra-1

Organism

Rattus norvegicus (Rat)

Length

455 amino acids

AlphaFoldDB

AF-P62813-F1-model_v4.pdb

Function

Alpha subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA); a major inhibitory neurotransmitter in the brain. GABA-gated chloride channels; also named GABA(A) receptors (GABAAR); consist of five subunits arranged around a central pore and contain GABA active binding site(s) located at the alpha and beta subunit interface(s). When activated by GABA; GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient. Alpha-1/GABRA1-containing GABAARs are largely synaptic. Chloride influx into the postsynaptic neuron following GABAAR opening decreases the neuron ability to generate a new action potential; thereby reducing nerve transmission. GABAARs containing alpha-1 and beta-2 or -3 subunits exhibit synaptogenic activity; the gamma-2 subunit being necessary but not sufficient to induce rapid synaptic contacts formation (By similarity). GABAARs function also as histamine receptor where histamine binds at the interface of two neighboring beta subunits and potentiates GABA response. GABAARs containing alpha; beta and epsilon subunits also permit spontaneous chloride channel activity while preserving the structural information required for GABA-gated openings. Alpha-1-mediated plasticity in the orbitofrontal cortex regulates context-dependent action selection (By similarity). Together with rho subunits; may also control neuronal and glial GABAergic transmission in the cerebellum (By similarity).

Sequence

MKKSRGLSDYLWAWTLILSTLSGRSYGQPSQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPLIKKNNTYAPTATSYTPNLARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSVSKIDRLSRIAFPLLFGIFNLVYWATYLNREPQLKAPTPHQ

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

BINDING 93; /ligand="4-aminobutanoate": "ligand shared with the neighboring beta subunit"; /ligand="4-aminobutanoate": "ligand shared with the neighboring beta subunit"

Disease

Location

Expressed in brain (at protein level). Expressed in lungs; in alveolar epithelium (PubMed:17003036).

DOI ID

10.1016/0014-5793(89)80271-6; 10.1016/0896-6273(89)90243-2; 10.1016/0169-328x(90)90017-8; 10.1101/sqb.1990.055.01.006; 10.1101/gr.2596504; 10.1002/j.1460-2075.1992.tb05258.x; 10.1523/jneurosci.18-05-01693.1998; 10.1124/mol.55.1.168; 10.1038/nn0901-908; 10.1074/jbc.m606895200; 10.1074/jbc.m709993200; 10.1016/j.ejcb.2014.07.007; 10.1016/j.neuron.2017.02.023; 10.7554/elife.39383

RefSeq

NP_899155.1; XP_006246185.1; XP_006246186.1; XP_017452668.1

Feature